Feature metadata: imported by the user in the form of a panel_metadata file, which is a table containing all markers measured, each annotated with either lineage or functional information for downstream analysis. The SingleCellExperiment class is a data container, storing multiple layers of data to create the SingleCellExperiment object, which holds all relevant data for an experiment. ( B) SingleCellExperiment structure in ImmunoCluster. ( A) Schematic outlining the typical cytometry workflow and its interactions with the SingleCellExperiement ImmunoCluster object. Francis Crick Institute, United Kingdom.Cancer Systems Biology Laboratory, The Francis Crick Institute, United Kingdom.Haematology Department, Guy’s Hospital, United Kingdom.
Centre for Host Microbiome Interaction, FoDOCS, King’s College, Guy’s Hospital, United Kingdom.UCL Cancer Institute, Paul O'Gorman Building, University College London, United Kingdom.Institut Cochin, Institut National de la Santé et de la Recherche Médicale U1016, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 8104, Université Paris Descartes, France.School of Cancer and Pharmaceutical Sciences, King’s College London, Faculty of Life Sciences and Medicine, Guy’s Hospital, United Kingdom.
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